Variant report

Variant	rs13429220
Chromosome Location	chr2:178577002-178577003
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:178560703..178563309-chr2:178574867..178577003,2	K562	blood:
2	chr2:178563706..178566606-chr2:178575234..178578088,2	K562	blood:
3	chr2:178567581..178570235-chr2:178573899..178577717,4	K562	blood:

Variant related genes	Relation type
ENSG00000229941	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10165826	0.82[YRI][hapmap];0.94[AMR][1000 genomes]
rs10168641	0.87[AMR][1000 genomes]
rs10172247	0.87[AMR][1000 genomes]
rs10172800	0.87[AMR][1000 genomes]
rs10177961	0.82[YRI][hapmap];0.94[AMR][1000 genomes]
rs10178433	0.82[YRI][hapmap]
rs10178985	0.83[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10192225	0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10194370	0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10202985	0.94[AMR][1000 genomes]
rs10210259	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13422021	0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13427906	0.87[AMR][1000 genomes]
rs13431084	1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes]
rs1438035	1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes]
rs1438046	0.87[AMR][1000 genomes]
rs16865593	0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16865604	0.82[LWK][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs16865698	0.87[AMR][1000 genomes]
rs16865700	0.87[AMR][1000 genomes]
rs16865709	0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1866214	0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2164858	0.87[AMR][1000 genomes]
rs57807004	0.87[AMR][1000 genomes]
rs60501109	0.87[AMR][1000 genomes]
rs6708025	0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6727390	0.87[AMR][1000 genomes]
rs6752409	0.94[AMR][1000 genomes]
rs6760512	0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs714528	0.82[YRI][hapmap];0.94[AMR][1000 genomes]
rs73979531	0.87[AMR][1000 genomes]
rs7569984	0.87[AMR][1000 genomes]
rs7583817	0.87[AMR][1000 genomes]
rs7606084	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv431812	chr2:178525371-178584470	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1007925	chr2:178535922-178577002	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv870023	chr2:178545623-178581407	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1005854	chr2:178546907-178586608	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2762967	chr2:178546919-178577002	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1005991	chr2:178550049-178577002	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1003983	chr2:178551958-178577002	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178573600-178577600	Enhancers	Fetal Kidney	kidney
2	chr2:178574200-178579200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:178574200-178579400	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:178574200-178579600	Weak transcription	Brain Germinal Matrix	brain
5	chr2:178574200-178580600	Weak transcription	Brain Angular Gyrus	brain
6	chr2:178574400-178579600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:178574400-178579600	Weak transcription	Brain Substantia Nigra	brain
8	chr2:178575000-178579200	Weak transcription	Left Ventricle	heart
9	chr2:178575600-178577800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:178576200-178577400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:178577000-178578800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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