Variant report

Variant	rs6749088
Chromosome Location	chr2:178594541-178594542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10166758	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10173243	0.95[EUR][1000 genomes]
rs10178433	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10210259	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12465589	0.81[EUR][1000 genomes]
rs13412319	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1347730	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1438035	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs1465830	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2033761	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2164859	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2365623	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2365625	1.00[CEU][hapmap]
rs3770027	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4893983	0.95[EUR][1000 genomes]
rs6737254	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6756994	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7573820	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178589400-178595600	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:178592200-178595600	Enhancers	Fetal Kidney	kidney
3	chr2:178593000-178596800	Weak transcription	Ovary	ovary
4	chr2:178594000-178596000	Enhancers	K562	blood
5	chr2:178594000-178605600	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:178594400-178596200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links