Variant report
| Variant | rs10166758 |
|---|---|
| Chromosome Location | chr2:178584427-178584428 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:178577863..178580571-chr2:178582573..178585584,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10173243 | 0.81[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10178433 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs12465589 | 0.86[EUR][1000 genomes] |
| rs13412319 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs1347730 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs1438040 | 0.92[YRI][hapmap] |
| rs1465830 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs2033761 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs2033763 | 0.83[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs2164859 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs2365623 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs2365625 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs3754996 | 0.92[YRI][hapmap] |
| rs3770027 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs3770045 | 0.92[YRI][hapmap] |
| rs4277559 | 0.81[AFR][1000 genomes] |
| rs4893983 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6433692 | 0.82[EUR][1000 genomes] |
| rs6737254 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs6749088 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs6756994 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes] |
| rs7573820 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs934799 | 0.88[AFR][1000 genomes] |
| rs9808399 | 1.00[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999086 | chr2:178262348-178773585 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv536055 | chr2:178262348-178773585 | Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv431812 | chr2:178525371-178584470 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv1005854 | chr2:178546907-178586608 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:178581000-178587800 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 2 | chr2:178584000-178589000 | Weak transcription | Colon Smooth Muscle | Colon |
