Variant report

Variant	rs10173243
Chromosome Location	chr2:178585934-178585935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10166758	0.81[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10178433	0.95[EUR][1000 genomes]
rs12465589	0.86[EUR][1000 genomes]
rs13412319	0.95[EUR][1000 genomes]
rs1347730	0.95[EUR][1000 genomes]
rs1465830	0.86[EUR][1000 genomes]
rs2033761	0.86[EUR][1000 genomes]
rs2033763	0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs2164859	0.95[EUR][1000 genomes]
rs2365623	0.95[EUR][1000 genomes]
rs3770027	1.00[EUR][1000 genomes]
rs4893983	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6433692	0.82[EUR][1000 genomes]
rs6737254	0.95[EUR][1000 genomes]
rs6749088	0.95[EUR][1000 genomes]
rs6756994	0.86[EUR][1000 genomes]
rs7573820	0.95[EUR][1000 genomes]
rs934799	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1005854	chr2:178546907-178586608	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178581000-178587800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:178584000-178589000	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:178585800-178589800	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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