Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10166758	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs10173243	0.95[EUR][1000 genomes]
rs10178433	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12465589	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12620627	0.88[YRI][hapmap];0.99[AFR][1000 genomes]
rs13412319	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1344924	0.85[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs1347730	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1465830	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2033761	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2164859	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2365623	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2365625	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs3770027	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4893983	0.95[EUR][1000 genomes]
rs6433692	0.87[EUR][1000 genomes]
rs6737254	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6749088	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6756994	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9808399	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1005854	chr2:178546907-178586608	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178581000-178587800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:178584000-178589000	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:178585800-178589800	Enhancers	Fetal Kidney	kidney
4	chr2:178586000-178589200	Weak transcription	Liver	Liver
5	chr2:178586200-178589200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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