Variant report

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:178088476..178090203-chr2:178588008..178591077,3	K562	blood:
2	chr2:178589552..178591221-chr2:178591349..178593643,3	K562	blood:
3	chr2:178259134..178259698-chr2:178588986..178589773,2	K562	blood:
4	chr2:178076844..178079068-chr2:178587919..178590256,2	K562	blood:
5	chr2:178578841..178579788-chr2:178589264..178590054,2	K562	blood:
6	chr2:178354172..178355030-chr2:178589245..178590053,2	K562	blood:
7	chr2:178029060..178030036-chr2:178589141..178590045,3	K562	blood:
8	chr2:178077568..178079461-chr2:178587919..178590496,2	K562	blood:
9	chr2:178479040..178481545-chr2:178589525..178591056,2	K562	blood:
10	chr2:178354401..178354989-chr2:178589086..178589867,2	MCF-7	breast:
11	chr2:178148139..178151111-chr2:178587913..178590676,3	K562	blood:
12	chr2:178589262..178589874-chr2:178628223..178628806,2	MCF-7	breast:
13	chr2:178354261..178355087-chr2:178589085..178589968,5	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11886258	1.00[EUR][1000 genomes]
rs11901841	1.00[EUR][1000 genomes]
rs13428260	1.00[EUR][1000 genomes]
rs1344924	0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1358300	1.00[EUR][1000 genomes]
rs16865743	1.00[EUR][1000 genomes]
rs56797590	1.00[EUR][1000 genomes]
rs57026464	1.00[EUR][1000 genomes]
rs57986087	1.00[EUR][1000 genomes]
rs58471763	1.00[EUR][1000 genomes]
rs59234264	1.00[EUR][1000 genomes]
rs59572353	1.00[EUR][1000 genomes]
rs61560417	1.00[EUR][1000 genomes]
rs6714540	1.00[EUR][1000 genomes]
rs73026501	1.00[EUR][1000 genomes]
rs73028307	1.00[EUR][1000 genomes]
rs73028314	1.00[EUR][1000 genomes]
rs73028315	1.00[EUR][1000 genomes]
rs73028326	1.00[EUR][1000 genomes]
rs73028333	1.00[EUR][1000 genomes]
rs73028337	1.00[EUR][1000 genomes]
rs73028352	1.00[EUR][1000 genomes]
rs73028355	1.00[EUR][1000 genomes]
rs73030318	1.00[EUR][1000 genomes]
rs73030323	1.00[EUR][1000 genomes]
rs73030331	1.00[EUR][1000 genomes]
rs73030336	1.00[EUR][1000 genomes]
rs73030347	1.00[EUR][1000 genomes]
rs73030350	1.00[EUR][1000 genomes]
rs73030357	1.00[EUR][1000 genomes]
rs73030362	1.00[EUR][1000 genomes]
rs73032055	1.00[EUR][1000 genomes]
rs73032059	1.00[EUR][1000 genomes]
rs73032072	1.00[EUR][1000 genomes]
rs73038286	1.00[EUR][1000 genomes]
rs73038287	1.00[EUR][1000 genomes]
rs73042837	1.00[EUR][1000 genomes]
rs73042842	1.00[EUR][1000 genomes]
rs7573820	0.88[YRI][hapmap];0.99[AFR][1000 genomes]
rs7577598	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178585800-178589800	Enhancers	Fetal Kidney	kidney
2	chr2:178587800-178594000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr2:178589200-178589800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
4	chr2:178589200-178589800	Enhancers	Fetal Lung	lung
5	chr2:178589200-178593000	Enhancers	Ovary	ovary
6	chr2:178589400-178591600	Weak transcription	Fetal Brain Male	brain
7	chr2:178589400-178594200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:178589400-178595600	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:178589600-178589800	Enhancers	Brain Anterior Caudate	brain
10	chr2:178589600-178590200	Enhancers	HUVEC	blood vessel
11	chr2:178589600-178590600	Weak transcription	Fetal Stomach	stomach
12	chr2:178589600-178590800	Weak transcription	Fetal Muscle Leg	muscle
13	chr2:178589600-178591600	Weak transcription	Stomach Mucosa	stomach
14	chr2:178589600-178591800	Weak transcription	Fetal Intestine Small	intestine
15	chr2:178589600-178593000	Weak transcription	Liver	Liver

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