Variant report
Variant | rs73028355 |
---|---|
Chromosome Location | chr2:178600040-178600041 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:178579061..178582012-chr2:178598447..178601260,2 | K562 | blood: | |
2 | chr2:178598484..178600375-chr2:178617502..178619853,2 | MCF-7 | breast: | |
3 | chr2:178599517..178602182-chr2:178604916..178607507,2 | K562 | blood: | |
4 | chr2:178597588..178600466-chr2:178601203..178603496,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11886258 | 1.00[EUR][1000 genomes] |
rs11901841 | 1.00[EUR][1000 genomes] |
rs12620627 | 1.00[EUR][1000 genomes] |
rs13428260 | 1.00[EUR][1000 genomes] |
rs1344924 | 1.00[EUR][1000 genomes] |
rs1358300 | 1.00[EUR][1000 genomes] |
rs16865743 | 1.00[EUR][1000 genomes] |
rs56797590 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57026464 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57986087 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58471763 | 1.00[EUR][1000 genomes] |
rs59234264 | 1.00[EUR][1000 genomes] |
rs59572353 | 1.00[EUR][1000 genomes] |
rs61560417 | 1.00[EUR][1000 genomes] |
rs6714540 | 1.00[EUR][1000 genomes] |
rs73026501 | 1.00[EUR][1000 genomes] |
rs73028307 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73028314 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73028315 | 1.00[EUR][1000 genomes] |
rs73028326 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73028333 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73028337 | 1.00[EUR][1000 genomes] |
rs73028352 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73030318 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73030323 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73030331 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73030336 | 1.00[EUR][1000 genomes] |
rs73030347 | 1.00[EUR][1000 genomes] |
rs73030350 | 1.00[EUR][1000 genomes] |
rs73030357 | 1.00[EUR][1000 genomes] |
rs73030362 | 1.00[EUR][1000 genomes] |
rs73032055 | 1.00[EUR][1000 genomes] |
rs73032059 | 1.00[EUR][1000 genomes] |
rs73032072 | 1.00[EUR][1000 genomes] |
rs73038286 | 1.00[EUR][1000 genomes] |
rs73038287 | 1.00[EUR][1000 genomes] |
rs73042837 | 1.00[EUR][1000 genomes] |
rs73042842 | 1.00[EUR][1000 genomes] |
rs7577598 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv999086 | chr2:178262348-178773585 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
2 | nsv536055 | chr2:178262348-178773585 | Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:178594000-178605600 | Weak transcription | Fetal Muscle Leg | muscle |
2 | chr2:178597800-178610200 | Weak transcription | Adipose Nuclei | Adipose |
3 | chr2:178598400-178603200 | Weak transcription | Ovary | ovary |
4 | chr2:178599200-178604600 | Weak transcription | Fetal Kidney | kidney |