Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:178088476..178090203-chr2:178588008..178591077,3	K562	blood:
2	chr2:178589552..178591221-chr2:178591349..178593643,3	K562	blood:
3	chr2:178197665..178199290-chr2:178590307..178592698,2	K562	blood:
4	chr2:178479040..178481545-chr2:178589525..178591056,2	K562	blood:
5	chr2:178590388..178593361-chr2:178606001..178607897,2	K562	blood:
6	chr2:178148139..178151111-chr2:178587913..178590676,3	K562	blood:
7	chr2:178075122..178077953-chr2:178590513..178592253,2	K562	blood:
8	chr2:178589973..178591611-chr2:178597442..178599800,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11886258	1.00[EUR][1000 genomes]
rs11901841	1.00[EUR][1000 genomes]
rs12620627	0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13428260	1.00[EUR][1000 genomes]
rs1358300	1.00[EUR][1000 genomes]
rs16865743	1.00[EUR][1000 genomes]
rs56797590	1.00[EUR][1000 genomes]
rs57026464	1.00[EUR][1000 genomes]
rs57986087	1.00[EUR][1000 genomes]
rs58471763	1.00[EUR][1000 genomes]
rs59234264	1.00[EUR][1000 genomes]
rs59572353	1.00[EUR][1000 genomes]
rs61560417	1.00[EUR][1000 genomes]
rs6714540	1.00[EUR][1000 genomes]
rs73026501	1.00[EUR][1000 genomes]
rs73028307	1.00[EUR][1000 genomes]
rs73028314	1.00[EUR][1000 genomes]
rs73028315	1.00[EUR][1000 genomes]
rs73028326	1.00[EUR][1000 genomes]
rs73028333	1.00[EUR][1000 genomes]
rs73028337	1.00[EUR][1000 genomes]
rs73028352	1.00[EUR][1000 genomes]
rs73028355	1.00[EUR][1000 genomes]
rs73030318	1.00[EUR][1000 genomes]
rs73030323	1.00[EUR][1000 genomes]
rs73030331	1.00[EUR][1000 genomes]
rs73030336	1.00[EUR][1000 genomes]
rs73030347	1.00[EUR][1000 genomes]
rs73030350	1.00[EUR][1000 genomes]
rs73030357	1.00[EUR][1000 genomes]
rs73030362	1.00[EUR][1000 genomes]
rs73032055	1.00[EUR][1000 genomes]
rs73032059	1.00[EUR][1000 genomes]
rs73032072	1.00[EUR][1000 genomes]
rs73038286	1.00[EUR][1000 genomes]
rs73038287	1.00[EUR][1000 genomes]
rs73042837	1.00[EUR][1000 genomes]
rs73042842	1.00[EUR][1000 genomes]
rs7573820	0.85[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7577598	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178587800-178594000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:178589200-178593000	Enhancers	Ovary	ovary
3	chr2:178589400-178591600	Weak transcription	Fetal Brain Male	brain
4	chr2:178589400-178594200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:178589400-178595600	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:178589600-178590600	Weak transcription	Fetal Stomach	stomach
7	chr2:178589600-178590800	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:178589600-178591600	Weak transcription	Stomach Mucosa	stomach
9	chr2:178589600-178591800	Weak transcription	Fetal Intestine Small	intestine
10	chr2:178589600-178593000	Weak transcription	Liver	Liver
11	chr2:178589800-178591000	Weak transcription	Fetal Lung	lung
12	chr2:178589800-178592200	Weak transcription	Fetal Kidney	kidney

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