Variant report

Variant	rs73032059
Chromosome Location	chr2:178648391-178648392
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10497484	1.00[ASN][1000 genomes]
rs11886258	1.00[EUR][1000 genomes]
rs11901841	1.00[EUR][1000 genomes]
rs12620627	1.00[EUR][1000 genomes]
rs13428260	1.00[EUR][1000 genomes]
rs1344924	1.00[EUR][1000 genomes]
rs1358300	1.00[EUR][1000 genomes]
rs16865743	1.00[EUR][1000 genomes]
rs56797590	1.00[EUR][1000 genomes]
rs57026464	1.00[EUR][1000 genomes]
rs57986087	1.00[EUR][1000 genomes]
rs58471763	1.00[EUR][1000 genomes]
rs59234264	1.00[EUR][1000 genomes]
rs59572353	1.00[EUR][1000 genomes]
rs61560417	1.00[EUR][1000 genomes]
rs6714540	1.00[EUR][1000 genomes]
rs73026501	1.00[EUR][1000 genomes]
rs73028307	1.00[EUR][1000 genomes]
rs73028314	1.00[EUR][1000 genomes]
rs73028315	1.00[EUR][1000 genomes]
rs73028326	1.00[EUR][1000 genomes]
rs73028333	1.00[EUR][1000 genomes]
rs73028337	1.00[EUR][1000 genomes]
rs73028352	1.00[EUR][1000 genomes]
rs73028355	1.00[EUR][1000 genomes]
rs73030318	1.00[EUR][1000 genomes]
rs73030323	1.00[EUR][1000 genomes]
rs73030331	1.00[EUR][1000 genomes]
rs73030336	1.00[EUR][1000 genomes]
rs73030347	1.00[EUR][1000 genomes]
rs73030350	1.00[EUR][1000 genomes]
rs73030357	1.00[EUR][1000 genomes]
rs73030362	1.00[EUR][1000 genomes]
rs73032055	1.00[EUR][1000 genomes]
rs73032072	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73038286	1.00[EUR][1000 genomes]
rs73038287	1.00[EUR][1000 genomes]
rs73042837	1.00[EUR][1000 genomes]
rs73042842	1.00[EUR][1000 genomes]
rs7577598	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178643400-178648400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:178647000-178649200	Enhancers	HMEC	breast
3	chr2:178647200-178650000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:178647400-178648600	Enhancers	Dnd41	blood
5	chr2:178647400-178649000	Enhancers	NHEK	skin
6	chr2:178647400-178650200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:178647600-178648600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:178647600-178648800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr2:178647600-178649000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr2:178647600-178649800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr2:178647600-178650000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr2:178647600-178650000	Enhancers	HSMM	muscle
13	chr2:178647800-178648600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:178647800-178649000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:178647800-178649800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr2:178647800-178650200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:178648000-178648400	Weak transcription	Primary T cells from cord blood	blood
18	chr2:178648000-178648600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:178648000-178648800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:178648000-178649000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr2:178648000-178650200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr2:178648200-178648800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr2:178648200-178649000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr2:178648200-178650000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr2:178648200-178650000	Enhancers	Sigmoid Colon	Sigmoid Colon

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