Variant report

Variant	rs13412319
Chromosome Location	chr2:178588175-178588176
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000170144	Chromatin interaction
ENSG00000116044	Chromatin interaction
ENSG00000229337	Chromatin interaction
ENSG00000229941	Chromatin interaction
ENSG00000263721	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10166758	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10173243	0.95[EUR][1000 genomes]
rs10178433	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10210259	0.93[YRI][hapmap]
rs12465589	0.81[EUR][1000 genomes]
rs1347730	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1438035	0.82[YRI][hapmap]
rs1465830	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2033761	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2164859	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2365623	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2365625	1.00[CEU][hapmap]
rs3770027	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4893983	0.95[EUR][1000 genomes]
rs6737254	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6749088	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6756994	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7573820	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178584000-178589000	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:178585800-178589800	Enhancers	Fetal Kidney	kidney
3	chr2:178586000-178589200	Weak transcription	Liver	Liver
4	chr2:178586200-178589200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:178587800-178594000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr2:178588000-178588400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:178588000-178588400	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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