Variant report
| Variant | rs10178765 |
|---|---|
| Chromosome Location | chr2:58510034-58510035 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10168877 | 0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10490249 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10490250 | 0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11125748 | 0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1156588 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11891166 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11891414 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12151813 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12615658 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12713381 | 0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13399274 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13412643 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2215960 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2861377 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34286598 | 0.81[EUR][1000 genomes] |
| rs34574366 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34692015 | 0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35459416 | 0.83[EUR][1000 genomes] |
| rs60851549 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71418489 | 0.81[EUR][1000 genomes] |
| rs725451 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs725452 | 0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7594908 | 0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7595474 | 0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9646985 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999042 | chr2:58326123-58530903 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv535734 | chr2:58326123-58530903 | ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:58500000-58510600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
