Variant report

Variant	rs725452
Chromosome Location	chr2:58511300-58511301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10168877	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10178765	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10490249	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10490250	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11125748	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1156588	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11891166	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11891414	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12151813	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12615658	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12713381	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13399274	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13412643	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2215960	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2861377	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34286598	0.82[EUR][1000 genomes]
rs34574366	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34692015	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35459416	0.84[EUR][1000 genomes]
rs60851549	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71418489	0.82[EUR][1000 genomes]
rs725451	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7594908	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7595474	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9646985	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999042	chr2:58326123-58530903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv535734	chr2:58326123-58530903	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58510600-58512000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:58510800-58511400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:58511200-58511400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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