Variant report

Variant	rs10182519
Chromosome Location	chr2:180630391-180630392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10168253	0.89[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10930886	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11673837	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12693205	0.82[ASN][1000 genomes]
rs1486239	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2615366	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs356412	0.81[ASN][1000 genomes]
rs357704	0.84[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4603724	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4893881	0.91[ASN][1000 genomes]
rs55924451	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs723356	0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs723357	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180629400-180631200	Weak transcription	Liver	Liver
2	chr2:180629600-180630600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180629600-180633200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:180630000-180630800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr2:180630000-180631200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:180630000-180631200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:180630000-180631800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:180630000-180632200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:180630000-180632200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr2:180630200-180631000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:180630200-180631200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:180630200-180632200	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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