Variant report

Variant	rs10930886
Chromosome Location	chr2:180611357-180611358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10168253	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs10182519	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11673837	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12693205	0.94[ASN][1000 genomes]
rs1486239	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2615366	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs356412	0.91[ASN][1000 genomes]
rs357704	0.90[JPT][hapmap]
rs4603724	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs4893881	0.82[EUR][1000 genomes]
rs723356	0.89[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs723357	0.90[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180608800-180613000	Enhancers	Fetal Lung	lung
2	chr2:180610400-180612000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:180610800-180613800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:180610800-180614000	Weak transcription	Right Atrium	heart
5	chr2:180610800-180614000	Weak transcription	HSMM	muscle
6	chr2:180610800-180621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:180611000-180613800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:180611200-180612000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:180611200-180614000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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