Variant report

Variant	rs10183369
Chromosome Location	chr2:182630514-182630515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182622812..182624319-chr2:182629170..182631069,2	K562	blood:
2	chr2:182622819..182625911-chr2:182627931..182631069,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10173295	0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10178791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11884106	0.81[YRI][hapmap]
rs11884484	1.00[AMR][1000 genomes]
rs11884530	1.00[ASW][hapmap];0.85[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11889177	0.90[YRI][hapmap]
rs11895507	0.81[YRI][hapmap]
rs11898883	1.00[ASW][hapmap];0.85[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11904385	0.86[YRI][hapmap]
rs11904481	0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13385387	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13404097	1.00[ASW][hapmap];0.85[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13407158	0.81[YRI][hapmap]
rs13412336	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415704	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13431885	0.83[AFR][1000 genomes]
rs28730957	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56043868	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59024368	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59405729	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73030974	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73030984	1.00[AMR][1000 genomes]
rs9288070	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9288071	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9288072	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9288075	0.86[YRI][hapmap]
rs9630973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9630988	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182616800-182631000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:182629600-182630800	Weak transcription	Fetal Intestine Small	intestine
3	chr2:182629800-182630800	Weak transcription	Stomach Mucosa	stomach
4	chr2:182630400-182630600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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