Variant report

Variant	rs10183765
Chromosome Location	chr2:74193096-74193097
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74184012..74185764-chr2:74192518..74194366,2	MCF-7	breast:
2	chr2:74155988..74158659-chr2:74191123..74193320,3	K562	blood:
3	chr2:74187365..74198553-chr2:74205167..74212961,17	MCF-7	breast:
4	chr2:74186064..74194538-chr2:74205233..74212619,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235499	Chromatin interaction
ENSG00000237883	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10184613	1.00[AMR][1000 genomes]
rs10187397	1.00[AMR][1000 genomes]
rs13397363	1.00[AMR][1000 genomes]
rs13403888	1.00[AMR][1000 genomes]
rs13411065	1.00[AMR][1000 genomes]
rs13427742	1.00[AMR][1000 genomes]
rs58660474	1.00[AMR][1000 genomes]
rs59708395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011177	chr2:74167343-74239905	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74164800-74197200	Weak transcription	Stomach Mucosa	stomach
2	chr2:74182000-74197600	Weak transcription	Small Intestine	intestine
3	chr2:74185600-74197400	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:74186400-74194200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr2:74186400-74197600	Weak transcription	Gastric	stomach
6	chr2:74186600-74197600	Weak transcription	Pancreas	Pancrea
7	chr2:74186800-74197000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:74186800-74197000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:74186800-74197800	Weak transcription	Brain Substantia Nigra	brain
10	chr2:74187000-74197600	Weak transcription	Fetal Lung	lung
11	chr2:74187000-74197600	Weak transcription	HSMMtube	muscle
12	chr2:74187000-74197800	Weak transcription	NHLF	lung
13	chr2:74187000-74198000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:74187200-74194400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr2:74187200-74194400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:74187200-74195000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr2:74187200-74195200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr2:74187200-74196400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:74187200-74196400	Weak transcription	Spleen	Spleen
20	chr2:74187200-74196800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:74187200-74197000	Weak transcription	Right Ventricle	heart
22	chr2:74187200-74197400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr2:74187200-74197400	Weak transcription	Lung	lung
24	chr2:74187200-74197400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr2:74187200-74197600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr2:74187200-74197600	Weak transcription	Brain Hippocampus Middle	brain
27	chr2:74187200-74197600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr2:74187200-74197600	Weak transcription	Colonic Mucosa	Colon
29	chr2:74187200-74197600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr2:74187200-74197600	Weak transcription	Placenta	Placenta
31	chr2:74187200-74197600	Weak transcription	Left Ventricle	heart
32	chr2:74187200-74197600	Weak transcription	Psoas Muscle	Psoas
33	chr2:74187200-74197600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr2:74187200-74197600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr2:74187200-74197600	Weak transcription	Hela-S3	cervix
36	chr2:74187200-74197600	Weak transcription	NHDF-Ad	bronchial
37	chr2:74187200-74197800	Weak transcription	Liver	Liver
38	chr2:74187200-74197800	Weak transcription	Brain Angular Gyrus	brain
39	chr2:74187200-74198000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr2:74187200-74198200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr2:74187200-74198200	Weak transcription	Ovary	ovary
42	chr2:74187200-74198200	Weak transcription	NHEK	skin
43	chr2:74187200-74206600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr2:74187400-74194400	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr2:74187400-74196400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr2:74187400-74196600	Weak transcription	Primary B cells from cord blood	blood
47	chr2:74187400-74197600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr2:74187400-74198200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr2:74187600-74194400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr2:74187600-74197600	Weak transcription	Fetal Muscle Trunk	muscle

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