Variant report

Variant	rs13403888
Chromosome Location	chr2:74179116-74179117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:74177879..74179612-chr2:74189625..74192470,2	K562	blood:
2	chr2:74152615..74154824-chr2:74177137..74179524,2	MCF-7	breast:
3	chr2:74162910..74165695-chr2:74177403..74180794,3	K562	blood:
4	chr2:74173435..74175509-chr2:74179017..74183283,4	MCF-7	breast:
5	chr2:74176724..74179560-chr2:74211970..74214178,3	MCF-7	breast:
6	chr2:74177818..74179521-chr2:74208626..74211088,2	MCF-7	breast:
7	chr2:74153072..74159980-chr2:74171210..74180160,13	K562	blood:
8	chr2:74175256..74178069-chr2:74178764..74181766,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255989	Chromatin interaction
ENSG00000114956	Chromatin interaction
ENSG00000235499	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10183765	1.00[AMR][1000 genomes]
rs10184613	1.00[AMR][1000 genomes]
rs10187397	1.00[AMR][1000 genomes]
rs13397363	1.00[AMR][1000 genomes]
rs13411065	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13427742	1.00[AMR][1000 genomes]
rs58660474	1.00[AMR][1000 genomes]
rs59708395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011177	chr2:74167343-74239905	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74156400-74189200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:74157200-74187400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:74157600-74188000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:74159400-74186600	Strong transcription	HepG2	liver
5	chr2:74159800-74187200	Strong transcription	Dnd41	blood
6	chr2:74164800-74197200	Weak transcription	Stomach Mucosa	stomach
7	chr2:74165600-74187200	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:74165800-74187200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:74165800-74187200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:74166800-74188000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr2:74167000-74189000	Strong transcription	Fetal Thymus	thymus
12	chr2:74167400-74179200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:74168000-74187800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:74169600-74187200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr2:74169800-74187200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:74170000-74179200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:74170400-74179400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:74170400-74187600	Strong transcription	Fetal Muscle Trunk	muscle
19	chr2:74170600-74187200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr2:74170800-74179600	Strong transcription	Lung	lung
21	chr2:74170800-74182000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:74170800-74187800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr2:74170800-74188000	Strong transcription	Fetal Muscle Leg	muscle
24	chr2:74171000-74179200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr2:74171000-74180600	Strong transcription	Fetal Brain Female	brain
26	chr2:74171000-74182000	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr2:74171000-74186800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr2:74171000-74187400	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr2:74171000-74188000	Strong transcription	A549	lung
30	chr2:74171200-74179200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:74171200-74179400	Strong transcription	K562	blood
32	chr2:74171200-74182800	Strong transcription	Placenta	Placenta
33	chr2:74171400-74179200	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr2:74171600-74184000	Strong transcription	HSMM	muscle
35	chr2:74171600-74187400	Strong transcription	Stomach Smooth Muscle	stomach
36	chr2:74171800-74180600	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr2:74171800-74183200	Strong transcription	Hela-S3	cervix
38	chr2:74171800-74187000	Strong transcription	Brain Germinal Matrix	brain
39	chr2:74172000-74179200	Genic enhancers	Primary T cells fromperipheralblood	blood
40	chr2:74172000-74179400	Strong transcription	Osteobl	bone
41	chr2:74172400-74179200	Strong transcription	Brain Hippocampus Middle	brain
42	chr2:74173400-74179200	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr2:74173400-74189200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr2:74173600-74179200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
45	chr2:74173600-74180800	Strong transcription	Placenta Amnion	Placenta Amnion
46	chr2:74173600-74182200	Strong transcription	Fetal Lung	lung
47	chr2:74173600-74186800	Strong transcription	Brain Substantia Nigra	brain
48	chr2:74173600-74187200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr2:74173600-74187200	Strong transcription	Brain Cingulate Gyrus	brain
50	chr2:74173600-74187200	Strong transcription	Thymus	Thymus

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