Variant report

Variant	rs13427742
Chromosome Location	chr2:74136603-74136604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:74135282..74138023-chr2:74306309..74308409,2	K562	blood:
2	chr2:74132299..74136854-chr2:74145203..74152405,6	K562	blood:
3	chr2:74133774..74136994-chr2:74138237..74139777,3	MCF-7	breast:
4	chr2:74133605..74137244-chr2:74210575..74213593,3	MCF-7	breast:
5	chr2:74134106..74136782-chr2:74143787..74147484,3	K562	blood:
6	chr2:74134376..74137074-chr2:74208526..74211884,3	MCF-7	breast:
7	chr2:74133818..74137397-chr2:74152829..74154524,3	MCF-7	breast:
8	chr2:74135494..74138316-chr2:74142504..74144827,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10183765	1.00[AMR][1000 genomes]
rs10184613	1.00[AMR][1000 genomes]
rs10187397	1.00[AMR][1000 genomes]
rs13397363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13403888	1.00[AMR][1000 genomes]
rs13411065	1.00[AMR][1000 genomes]
rs58660474	1.00[AMR][1000 genomes]
rs59708395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470469	chr2:74122223-74137844	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv1010401	chr2:74128361-74151102	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74122200-74143800	Weak transcription	Ovary	ovary
2	chr2:74124600-74153200	Weak transcription	Colonic Mucosa	Colon
3	chr2:74127600-74145600	Weak transcription	Fetal Intestine Small	intestine
4	chr2:74130200-74148200	Weak transcription	Fetal Intestine Large	intestine
5	chr2:74133200-74148200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:74133600-74136800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:74134000-74136800	Strong transcription	Aorta	Aorta
8	chr2:74134400-74136800	Strong transcription	Duodenum Smooth Muscle	Duodenum
9	chr2:74135600-74138600	Strong transcription	Fetal Stomach	stomach
10	chr2:74135600-74148200	Strong transcription	Stomach Smooth Muscle	stomach
11	chr2:74135800-74137000	Enhancers	Fetal Kidney	kidney
12	chr2:74136200-74140600	Weak transcription	NHLF	lung
13	chr2:74136200-74147200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:74136200-74147200	Strong transcription	Colon Smooth Muscle	Colon
15	chr2:74136400-74136800	Genic enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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