Variant report

Variant	rs10186868
Chromosome Location	chr2:183155907-183155908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10180233	0.95[CEU][hapmap]
rs10184548	0.85[CEU][hapmap]
rs10193166	0.88[CEU][hapmap]
rs10206325	0.91[CEU][hapmap]
rs11893572	0.87[CEU][hapmap]
rs11895090	0.91[CEU][hapmap]
rs1196058	0.87[CEU][hapmap]
rs1196062	0.91[CEU][hapmap]
rs1196065	0.87[CEU][hapmap]
rs1196066	0.87[CEU][hapmap]
rs1196074	0.84[CEU][hapmap]
rs1210652	0.87[CEU][hapmap]
rs12612546	0.95[CEU][hapmap]
rs12693301	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs1344772	0.84[CEU][hapmap]
rs1432534	0.91[CEU][hapmap]
rs1438068	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs1864855	0.92[CEU][hapmap]
rs1897472	0.87[CEU][hapmap]
rs1946602	0.82[CEU][hapmap]
rs1991765	0.95[CEU][hapmap]
rs3769788	0.92[CEU][hapmap]
rs4666578	0.84[CEU][hapmap]
rs6728985	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183149000-183158200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:183155600-183156000	Enhancers	Right Atrium	heart
3	chr2:183155600-183156400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:183155800-183156200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:183155800-183156600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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