Variant report

Variant	rs1344772
Chromosome Location	chr2:183064460-183064461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10180233	0.89[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10181526	0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10184548	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10186868	0.84[CEU][hapmap]
rs10193166	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10206325	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10930992	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11674335	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11886669	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11886671	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11893572	0.88[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11895090	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196058	0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1196059	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196062	0.89[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196065	0.88[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196066	0.88[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196067	0.88[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196072	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1196074	0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1210652	0.88[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12467526	0.86[CHB][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477627	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12477696	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12612546	0.89[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12693299	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12693300	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13016087	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1347081	0.81[EUR][1000 genomes]
rs1368220	0.81[EUR][1000 genomes]
rs1432522	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432531	0.86[JPT][hapmap]
rs1432534	0.89[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594618	0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1864855	0.90[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1897472	0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1946602	0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1991765	0.89[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2368254	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2368256	0.83[EUR][1000 genomes]
rs2368279	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3769788	0.90[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769791	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3769801	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4666578	0.88[CHB][hapmap];0.86[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666579	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4666820	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6433959	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6433960	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6706326	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6714282	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6717783	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6728985	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6733935	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6734868	0.81[EUR][1000 genomes]
rs6749969	0.81[EUR][1000 genomes]
rs6758334	0.88[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7597711	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183048400-183073000	Weak transcription	Fetal Stomach	stomach
2	chr2:183050800-183065000	Weak transcription	Aorta	Aorta
3	chr2:183052200-183065000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:183056400-183065000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:183058800-183065200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:183060600-183065000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:183060800-183065000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:183060800-183067200	Weak transcription	Fetal Brain Female	brain
9	chr2:183061000-183065000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:183061000-183085000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:183062800-183067000	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:183064200-183066400	Weak transcription	Fetal Muscle Leg	muscle
13	chr2:183064200-183067000	Weak transcription	Right Ventricle	heart

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