Variant report

Variant	rs1196072
Chromosome Location	chr2:183020354-183020355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10180233	0.82[EUR][1000 genomes]
rs10181526	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10184548	0.83[EUR][1000 genomes]
rs10193166	0.80[EUR][1000 genomes]
rs10206325	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10930992	0.85[EUR][1000 genomes]
rs11674335	0.85[EUR][1000 genomes]
rs11895090	0.80[EUR][1000 genomes]
rs1196057	0.86[EUR][1000 genomes]
rs1196058	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1196059	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1196062	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1196065	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1196066	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1196067	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1196074	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1210652	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12467526	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12477627	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12477696	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12612546	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12693299	0.82[EUR][1000 genomes]
rs12693300	0.80[EUR][1000 genomes]
rs13016087	0.88[EUR][1000 genomes]
rs1344772	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1347081	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1368217	0.83[EUR][1000 genomes]
rs1368218	0.84[EUR][1000 genomes]
rs1368220	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1368221	0.81[ASN][1000 genomes]
rs1432522	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1432528	0.83[EUR][1000 genomes]
rs1432529	0.84[EUR][1000 genomes]
rs1432530	0.85[EUR][1000 genomes]
rs1432531	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1432534	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1594618	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1864855	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1897472	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1946602	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1991765	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1999	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2217616	0.86[EUR][1000 genomes]
rs2368254	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2368256	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2368279	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3769788	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3769791	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3769801	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4666577	0.85[ASN][1000 genomes]
rs4666578	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4666579	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4666820	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6433959	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6433960	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6706326	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6714277	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6717783	0.82[EUR][1000 genomes]
rs6728985	0.84[EUR][1000 genomes]
rs6733935	0.82[AMR][1000 genomes]
rs6734868	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6749969	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6758334	0.81[EUR][1000 genomes]
rs7580614	0.85[EUR][1000 genomes]
rs7580716	0.85[ASN][1000 genomes]
rs7592780	0.84[EUR][1000 genomes]
rs7597711	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182998600-183024000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:183013600-183021200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:183013600-183048000	Weak transcription	Aorta	Aorta
4	chr2:183019400-183048200	Weak transcription	Left Ventricle	heart

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