Variant report

Variant	rs1368221
Chromosome Location	chr2:183004997-183004998
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182966628..182969606-chr2:183003537..183005254,2	MCF-7	breast:
2	chr2:183000755..183003130-chr2:183004519..183006637,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150722	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10181526	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196057	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1196058	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196067	0.86[EUR][1000 genomes]
rs1196072	0.81[ASN][1000 genomes]
rs1196074	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12617563	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1347081	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1368217	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1368218	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1368220	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432528	0.85[EUR][1000 genomes]
rs1432529	0.86[EUR][1000 genomes]
rs1432530	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1432531	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1594618	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1897472	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1946602	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1999	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2217616	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2368256	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4666577	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6711862	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6714277	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6734868	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6749969	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7580614	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7580716	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7592780	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182996800-183009800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:182998600-183024000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:182999200-183016000	Weak transcription	Gastric	stomach
4	chr2:182999600-183008800	Weak transcription	Aorta	Aorta
5	chr2:183000000-183009200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:183000400-183007000	Weak transcription	Psoas Muscle	Psoas
7	chr2:183002400-183013000	Weak transcription	Left Ventricle	heart
8	chr2:183004400-183005600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:183004400-183005800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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