Variant report

Variant	rs1196057
Chromosome Location	chr2:182999636-182999637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182998476..183000957-chr2:183001205..183003755,2	MCF-7	breast:
2	chr2:182943137..182945042-chr2:182998880..183001308,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10180233	1.00[JPT][hapmap]
rs10181526	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10184548	1.00[JPT][hapmap]
rs10193166	0.92[JPT][hapmap]
rs10206325	0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs11893572	1.00[JPT][hapmap]
rs11895090	1.00[JPT][hapmap]
rs1196058	1.00[ASW][hapmap];0.87[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1196059	0.80[EUR][1000 genomes]
rs1196062	1.00[JPT][hapmap]
rs1196065	0.87[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs1196066	0.91[ASW][hapmap];0.87[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs1196067	1.00[JPT][hapmap]
rs1196072	0.86[EUR][1000 genomes]
rs1196074	0.87[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1210652	0.91[ASW][hapmap];0.87[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs12612546	0.82[ASW][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs12617563	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1344772	0.86[JPT][hapmap]
rs1347081	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1368217	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1368218	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1368220	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1368221	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1432522	0.81[EUR][1000 genomes]
rs1432528	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1432529	0.98[EUR][1000 genomes]
rs1432530	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1432531	0.83[ASW][hapmap];0.92[CEU][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1432534	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1594618	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1864855	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1897472	1.00[ASW][hapmap];0.87[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1946602	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1991765	0.91[ASW][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs1999	0.83[ASW][hapmap];0.91[CEU][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2217616	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368254	0.80[EUR][1000 genomes]
rs2368256	0.81[ASN][1000 genomes]
rs3769788	1.00[JPT][hapmap]
rs3769801	0.80[EUR][1000 genomes]
rs4666577	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4666578	0.83[GIH][hapmap];1.00[JPT][hapmap]
rs6433960	0.80[EUR][1000 genomes]
rs6711862	0.92[CEU][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs6714277	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6728985	0.92[JPT][hapmap]
rs6734868	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6749969	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6758334	1.00[JPT][hapmap]
rs7580614	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7580716	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7592780	1.00[CEU][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes]
rs7607642	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182996400-182999800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:182996600-183000000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:182996800-183009800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:182997200-183002600	Weak transcription	Fetal Kidney	kidney
5	chr2:182998600-183024000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:182999000-183004400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:182999200-183016000	Weak transcription	Gastric	stomach
8	chr2:182999600-183008800	Weak transcription	Aorta	Aorta

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