Variant report

Variant	rs6749969
Chromosome Location	chr2:183009221-183009222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10180233	1.00[JPT][hapmap]
rs10181526	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10184548	0.90[JPT][hapmap]
rs10193166	0.83[JPT][hapmap]
rs10206325	0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs11893572	1.00[JPT][hapmap]
rs11895090	1.00[JPT][hapmap]
rs1196057	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1196058	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1196059	0.82[EUR][1000 genomes]
rs1196062	0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs1196065	0.87[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1196066	0.87[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1196067	0.81[CEU][hapmap];0.92[JPT][hapmap]
rs1196072	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196074	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1210652	0.87[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12467526	0.81[EUR][1000 genomes]
rs12477627	0.82[EUR][1000 genomes]
rs12612546	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12617563	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1344772	0.81[EUR][1000 genomes]
rs1347081	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368217	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1368218	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1368220	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368221	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432522	0.82[EUR][1000 genomes]
rs1432528	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1432529	0.94[EUR][1000 genomes]
rs1432530	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1432531	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432534	0.84[CEU][hapmap];0.92[JPT][hapmap]
rs1594618	0.80[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs1864855	0.80[CEU][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs1897472	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1946602	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1991765	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1999	0.91[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217616	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2368254	0.82[EUR][1000 genomes]
rs2368256	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3769788	0.80[CEU][hapmap];0.92[JPT][hapmap]
rs3769801	0.82[EUR][1000 genomes]
rs4666577	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666578	0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs4666579	0.81[EUR][1000 genomes]
rs6433959	0.82[EUR][1000 genomes]
rs6433960	0.82[EUR][1000 genomes]
rs6706326	0.80[EUR][1000 genomes]
rs6711862	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs6714277	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728985	0.83[JPT][hapmap]
rs6734868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758334	0.92[JPT][hapmap]
rs7580614	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7580716	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7592780	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs7597711	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182996800-183009800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:182998600-183024000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:182999200-183016000	Weak transcription	Gastric	stomach
4	chr2:183002400-183013000	Weak transcription	Left Ventricle	heart
5	chr2:183007200-183009600	Weak transcription	Psoas Muscle	Psoas
6	chr2:183007600-183010000	Enhancers	Hela-S3	cervix
7	chr2:183008400-183010200	Enhancers	HUVEC	blood vessel
8	chr2:183008600-183009400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:183008600-183010000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:183008600-183010000	Enhancers	Fetal Heart	heart
11	chr2:183008600-183010000	Enhancers	NH-A	brain
12	chr2:183008600-183010200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:183008800-183009400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr2:183008800-183009400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr2:183008800-183009400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr2:183008800-183009400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr2:183008800-183009400	Enhancers	NHLF	lung
18	chr2:183008800-183009800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr2:183008800-183009800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr2:183008800-183009800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr2:183008800-183009800	Enhancers	Aorta	Aorta
22	chr2:183008800-183010000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr2:183008800-183010000	Enhancers	Adipose Nuclei	Adipose
24	chr2:183008800-183010000	Enhancers	HSMM	muscle
25	chr2:183008800-183010000	Enhancers	HSMMtube	muscle
26	chr2:183008800-183010600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:183009200-183009600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:183009200-183009600	Enhancers	Osteobl	bone
29	chr2:183009200-183009800	Enhancers	Brain Anterior Caudate	brain
30	chr2:183009200-183009800	Enhancers	Pancreas	Pancrea
31	chr2:183009200-183009800	Enhancers	Right Atrium	heart
32	chr2:183009200-183010000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:183009200-183010000	Enhancers	Fetal Lung	lung
34	chr2:183009200-183010200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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