Variant report

Variant	rs7592780
Chromosome Location	chr2:182998767-182998768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:182607039..182609775-chr2:182996269..182999208,3	MCF-7	breast:
2	chr2:182998476..183000957-chr2:183001205..183003755,2	MCF-7	breast:
3	chr2:182754700..182758987-chr2:182995578..182999206,6	MCF-7	breast:
4	chr2:182765593..182767141-chr2:182997706..182999460,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260742	Chromatin interaction
ENSG00000138434	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10180233	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs10181526	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10184548	0.81[JPT][hapmap]
rs10206325	0.82[JPT][hapmap]
rs11893572	0.90[JPT][hapmap]
rs11895090	0.90[JPT][hapmap]
rs1196057	0.98[EUR][1000 genomes]
rs1196058	0.86[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs1196062	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs1196065	0.86[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs1196066	0.86[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs1196067	0.82[JPT][hapmap]
rs1196072	0.84[EUR][1000 genomes]
rs1196074	0.87[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs1210652	0.86[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs12612546	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs12617563	0.87[EUR][1000 genomes]
rs1347081	0.96[EUR][1000 genomes]
rs1368217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368220	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1368221	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1432528	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1432529	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1432530	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1432531	0.91[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1432534	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs1594618	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1864855	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs1897472	0.86[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs1946602	0.95[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs1991765	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs1999	0.90[CEU][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2217616	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs3769788	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs4666577	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4666578	0.82[JPT][hapmap]
rs6711862	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714277	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6734868	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes]
rs6749969	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs6758334	0.82[JPT][hapmap]
rs7580614	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7580716	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182996400-182999800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:182996600-182999000	Enhancers	NH-A	brain
3	chr2:182996600-182999000	Enhancers	NHLF	lung
4	chr2:182996600-182999600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:182996600-182999600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:182996600-183000000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:182996800-182999000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:182996800-182999000	Enhancers	Hela-S3	cervix
9	chr2:182996800-183009800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr2:182997000-182999200	Enhancers	Osteobl	bone
11	chr2:182997200-183002600	Weak transcription	Fetal Kidney	kidney
12	chr2:182998200-182998800	Flanking Active TSS	HUVEC	blood vessel
13	chr2:182998200-182999600	Enhancers	NHDF-Ad	bronchial
14	chr2:182998600-182999200	Enhancers	Gastric	stomach
15	chr2:182998600-182999400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:182998600-182999600	Enhancers	Aorta	Aorta
17	chr2:182998600-183024000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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