Variant report

Variant	rs10184548
Chromosome Location	chr2:183112764-183112765
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10180233	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10181526	0.86[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10186868	0.85[CEU][hapmap]
rs10193166	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10206325	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10930992	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674335	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11886669	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11886671	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11893572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11895090	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196058	0.84[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1196059	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196062	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196065	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196066	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196067	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196072	0.83[EUR][1000 genomes]
rs1196074	0.85[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1210652	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12467526	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12477627	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477696	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12612546	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12693299	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12693300	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12693301	0.90[CEU][hapmap]
rs13016087	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1344772	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1432522	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1432531	1.00[JPT][hapmap]
rs1432534	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1438068	0.85[CEU][hapmap]
rs1594618	0.86[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1864855	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1897472	0.84[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1946602	0.84[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1991765	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1999	0.82[JPT][hapmap]
rs2368254	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2368256	0.87[EUR][1000 genomes]
rs2368279	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769788	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3769791	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3769801	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4666578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4666579	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666820	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433959	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6433960	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6706326	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714282	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6717783	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6728985	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6734868	0.90[JPT][hapmap]
rs6749969	0.90[JPT][hapmap]
rs6758334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7592780	0.81[JPT][hapmap]
rs7597711	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183104600-183112800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:183106400-183138400	Weak transcription	Aorta	Aorta
3	chr2:183111000-183113400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:183111600-183117000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:183112200-183114200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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