Variant report

Variant	rs1432531
Chromosome Location	chr2:183007502-183007503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10180233	1.00[JPT][hapmap]
rs10181526	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10184548	1.00[JPT][hapmap]
rs10193166	0.91[JPT][hapmap]
rs10206325	1.00[JPT][hapmap]
rs11893572	1.00[JPT][hapmap]
rs11895090	1.00[JPT][hapmap]
rs1196057	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1196058	0.83[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1196062	1.00[JPT][hapmap]
rs1196065	0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs1196066	0.83[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs1196067	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1196072	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1210652	1.00[JPT][hapmap];0.90[MEX][hapmap]
rs12612546	0.83[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs12617563	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1344772	0.86[JPT][hapmap]
rs1347081	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368217	0.92[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs1368218	0.92[CEU][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1368220	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368221	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432528	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs1432529	0.87[EUR][1000 genomes]
rs1432530	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1432534	1.00[JPT][hapmap]
rs1594618	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1864855	1.00[JPT][hapmap]
rs1897472	0.91[ASW][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1946602	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1991765	0.83[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs1999	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217616	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2368256	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3769788	1.00[JPT][hapmap]
rs4666577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666578	1.00[JPT][hapmap]
rs6711862	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.96[EUR][1000 genomes]
rs6714277	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728985	0.91[JPT][hapmap]
rs6734868	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749969	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758334	1.00[JPT][hapmap]
rs7580614	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7580716	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7592780	0.91[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182996800-183009800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:182998600-183024000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:182999200-183016000	Weak transcription	Gastric	stomach
4	chr2:182999600-183008800	Weak transcription	Aorta	Aorta
5	chr2:183000000-183009200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:183002400-183013000	Weak transcription	Left Ventricle	heart
7	chr2:183005600-183008800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:183005600-183008800	Weak transcription	Adipose Nuclei	Adipose
9	chr2:183005600-183009200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:183005800-183008800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:183005800-183008800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:183007000-183007800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr2:183007200-183008400	Weak transcription	HUVEC	blood vessel
14	chr2:183007200-183008600	Weak transcription	Fetal Heart	heart
15	chr2:183007200-183009200	Weak transcription	Pancreas	Pancrea
16	chr2:183007200-183009200	Weak transcription	Right Atrium	heart
17	chr2:183007200-183009600	Weak transcription	Psoas Muscle	Psoas

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