Variant report

Variant	rs6733935
Chromosome Location	chr2:183042157-183042158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10206325	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1196058	0.80[AMR][1000 genomes]
rs1196059	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1196062	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1196066	0.84[AMR][1000 genomes]
rs1196072	0.82[AMR][1000 genomes]
rs1196074	0.82[AMR][1000 genomes]
rs1210652	0.84[AMR][1000 genomes]
rs12467526	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12477627	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12612546	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1344772	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1432522	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1432534	0.83[AMR][1000 genomes]
rs1864855	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1897472	0.82[AMR][1000 genomes]
rs1946602	0.80[AMR][1000 genomes]
rs1991765	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2368254	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3769788	0.82[AMR][1000 genomes]
rs3769791	0.82[AMR][1000 genomes]
rs3769801	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4666578	0.82[EUR][1000 genomes]
rs4666579	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6433959	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6433960	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6706326	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7597711	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183013600-183048000	Weak transcription	Aorta	Aorta
2	chr2:183019400-183048200	Weak transcription	Left Ventricle	heart
3	chr2:183025600-183046000	Weak transcription	Fetal Stomach	stomach
4	chr2:183032800-183042800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:183033400-183048000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:183034800-183046800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:183036600-183047400	Weak transcription	Fetal Brain Female	brain
8	chr2:183037800-183046000	Weak transcription	Spleen	Spleen
9	chr2:183041600-183048000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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