Variant report

Variant	rs10188058
Chromosome Location	chr2:74104872-74104873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1025424	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11683738	1.00[CHB][hapmap]
rs11898903	1.00[CHB][hapmap]
rs12464028	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12466586	1.00[CHB][hapmap]
rs12995468	1.00[CHB][hapmap]
rs13011961	1.00[CHB][hapmap]
rs13016198	1.00[CHB][hapmap]
rs1318987	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17404009	1.00[CHB][hapmap]
rs17676291	1.00[CHB][hapmap]
rs17725971	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes]
rs2567601	1.00[JPT][hapmap]
rs2567603	1.00[JPT][hapmap]
rs34240219	1.00[ASN][1000 genomes]
rs35058061	0.99[EUR][1000 genomes]
rs62150710	0.99[EUR][1000 genomes]
rs6717896	1.00[CHB][hapmap]
rs870722	1.00[CHB][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10188058	SPR	cis	brain	BrainEAC
rs10188058	ALMS1	cis	parietal	SCAN
rs10188058	ALMS1P	cis	cerebellum	SCAN
rs10188058	ALMS1	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74097600-74114600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:74104000-74105000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:74104000-74105000	Enhancers	NHEK	skin
4	chr2:74104000-74105400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:74104200-74105000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:74104200-74105000	Enhancers	HepG2	liver
7	chr2:74104400-74105000	Enhancers	K562	blood
8	chr2:74104400-74105200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr2:74104600-74105000	Active TSS	Colon Smooth Muscle	Colon
10	chr2:74104600-74105000	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr2:74104600-74105000	Active TSS	Rectal Smooth Muscle	rectum
12	chr2:74104600-74105000	Active TSS	Stomach Smooth Muscle	stomach
13	chr2:74104600-74105000	Flanking Active TSS	GM12878-XiMat	blood
14	chr2:74104600-74105000	Enhancers	Hela-S3	cervix
15	chr2:74104800-74105000	Active TSS	Adipose Nuclei	Adipose
16	chr2:74104800-74105000	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr2:74104800-74105000	Active TSS	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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