Variant report

Variant	rs17404009
Chromosome Location	chr2:74079765-74079766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74077294..74080205-chr2:74346163..74349130,2	K562	blood:
2	chr2:74076398..74079382-chr2:74079617..74082443,2	K562	blood:
3	chr2:74056698..74058945-chr2:74079558..74081408,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257800	Chromatin interaction
ENSG00000124356	Chromatin interaction

rs_ID	r²[population]
rs10188058	1.00[CHB][hapmap]
rs1025424	1.00[CHB][hapmap]
rs11683738	1.00[CHB][hapmap]
rs11898903	1.00[CHB][hapmap]
rs12466586	1.00[CHB][hapmap]
rs12995468	1.00[CHB][hapmap]
rs13016198	1.00[CHB][hapmap]
rs17676291	1.00[CHB][hapmap]
rs17725971	1.00[CHB][hapmap]
rs6717896	1.00[CHB][hapmap]
rs72811969	1.00[ASN][1000 genomes]
rs72811973	1.00[ASN][1000 genomes]
rs870722	1.00[CHB][hapmap]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74057000-74093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:74065000-74094400	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:74065600-74094400	Strong transcription	Dnd41	blood
4	chr2:74066200-74083600	Strong transcription	Primary B cells from peripheral blood	blood
5	chr2:74066400-74091600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:74066400-74094400	Strong transcription	Fetal Muscle Trunk	muscle
7	chr2:74066600-74094200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:74066600-74094400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:74066800-74094200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr2:74067000-74094200	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr2:74068400-74084800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr2:74068600-74094200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr2:74068800-74094400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr2:74068800-74094400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr2:74069600-74083400	Strong transcription	GM12878-XiMat	blood
16	chr2:74069600-74084200	Weak transcription	Stomach Mucosa	stomach
17	chr2:74070400-74090000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:74070600-74094200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:74070800-74089600	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:74070800-74093000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr2:74070800-74094200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr2:74070800-74094200	Strong transcription	Liver	Liver
23	chr2:74070800-74094400	Strong transcription	Placenta	Placenta
24	chr2:74070800-74094400	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr2:74071000-74085200	Strong transcription	Brain Hippocampus Middle	brain
26	chr2:74071000-74094400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr2:74071200-74081200	Strong transcription	Brain Germinal Matrix	brain
28	chr2:74071200-74083600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr2:74071200-74093800	Strong transcription	HepG2	liver
30	chr2:74071200-74094200	Strong transcription	Adipose Nuclei	Adipose
31	chr2:74071200-74094200	Strong transcription	Fetal Brain Female	brain
32	chr2:74071200-74094200	Strong transcription	Fetal Thymus	thymus
33	chr2:74071200-74094400	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr2:74071400-74080000	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr2:74071400-74082400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr2:74071400-74084600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr2:74071400-74084800	Strong transcription	Placenta Amnion	Placenta Amnion
38	chr2:74071400-74085200	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr2:74071400-74094000	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr2:74071400-74094200	Strong transcription	Primary T cells from cord blood	blood
41	chr2:74071600-74084600	Strong transcription	Brain Cingulate Gyrus	brain
42	chr2:74071600-74085000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr2:74071600-74089600	Strong transcription	Fetal Stomach	stomach
44	chr2:74071600-74094200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr2:74071600-74094200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr2:74071600-74094200	Strong transcription	Fetal Muscle Leg	muscle
47	chr2:74071600-74094200	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr2:74071600-74094200	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr2:74071600-74094600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr2:74071800-74080400	Strong transcription	Primary T helper naive cells from peripheral blood	blood

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