Variant report

Variant	rs10188156
Chromosome Location	chr2:99465875-99465876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10169003	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10172158	0.88[EUR][1000 genomes]
rs10181972	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11123755	0.88[EUR][1000 genomes]
rs11887536	0.88[EUR][1000 genomes]
rs11893888	0.82[EUR][1000 genomes]
rs12468024	0.88[EUR][1000 genomes]
rs12712033	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[ASN][1000 genomes]
rs12712034	0.90[CHB][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes]
rs12712035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12712036	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12712038	0.88[EUR][1000 genomes]
rs12712039	0.86[EUR][1000 genomes]
rs12992214	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13004923	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13389386	0.89[JPT][hapmap]
rs1356424	0.88[CEU][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1568213	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs1581250	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1581251	0.88[EUR][1000 genomes]
rs1878585	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1983352	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2276604	0.85[JPT][hapmap]
rs2280256	0.88[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4263159	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4850888	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4851162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4851163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4851167	0.88[EUR][1000 genomes]
rs4851170	0.88[EUR][1000 genomes]
rs4851171	0.87[EUR][1000 genomes]
rs6542838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6542839	0.96[CEU][hapmap];0.85[CHB][hapmap];0.93[EUR][1000 genomes]
rs6711022	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6713991	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6714243	0.88[EUR][1000 genomes]
rs6717372	0.85[EUR][1000 genomes]
rs6719634	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6726156	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6733011	0.97[ASN][1000 genomes]
rs6757099	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7579189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7581128	0.80[JPT][hapmap]
rs7608889	0.81[CEU][hapmap];0.85[JPT][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs925887	0.80[EUR][1000 genomes]
rs981601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs981602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv582517	chr2:99440917-99487972	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99450000-99468400	Weak transcription	Fetal Intestine Small	intestine
2	chr2:99453200-99473200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr2:99456200-99473000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:99463400-99485400	Weak transcription	Gastric	stomach
5	chr2:99465400-99466400	Enhancers	HepG2	liver
6	chr2:99465600-99466000	Enhancers	Pancreas	Pancrea

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