Variant report

Variant	rs1568213
Chromosome Location	chr2:99432063-99432064
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99219505..99221490-chr2:99431670..99433298,2	K562	blood:
2	chr2:99420757..99423586-chr2:99430934..99433054,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183513	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10169003	0.81[EUR][1000 genomes]
rs10174531	0.88[JPT][hapmap]
rs10181972	0.81[EUR][1000 genomes]
rs10188156	0.86[EUR][1000 genomes]
rs11893888	0.82[EUR][1000 genomes]
rs12712035	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs12712036	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12712039	0.85[EUR][1000 genomes]
rs13004923	0.81[EUR][1000 genomes]
rs1356424	0.96[CEU][hapmap];0.86[CHB][hapmap];0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1581250	0.81[EUR][1000 genomes]
rs1878585	0.81[EUR][1000 genomes]
rs1983352	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs2008648	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2138082	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2276604	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs2280256	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs4263159	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs4850888	0.85[EUR][1000 genomes]
rs4851162	0.86[EUR][1000 genomes]
rs4851163	0.86[EUR][1000 genomes]
rs6542838	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs6542839	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6711022	0.91[EUR][1000 genomes]
rs6713991	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs6719634	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6726156	0.82[EUR][1000 genomes]
rs6757099	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7579189	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs981601	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs981602	0.84[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99418000-99442200	Weak transcription	Stomach Mucosa	stomach
2	chr2:99423000-99432200	Weak transcription	Right Atrium	heart
3	chr2:99423400-99439200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr2:99423600-99439200	Weak transcription	Brain Angular Gyrus	brain
5	chr2:99423800-99434200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:99424000-99435600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:99424000-99438400	Weak transcription	Pancreas	Pancrea
8	chr2:99424800-99434800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:99426800-99432200	Weak transcription	Esophagus	oesophagus
10	chr2:99426800-99439200	Weak transcription	Gastric	stomach
11	chr2:99427200-99439000	Weak transcription	Aorta	Aorta
12	chr2:99427400-99442000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:99427600-99434000	Weak transcription	Lung	lung
14	chr2:99427600-99434800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr2:99427600-99437200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr2:99427600-99438000	Weak transcription	Fetal Intestine Large	intestine
17	chr2:99431800-99432600	Strong transcription	Fetal Intestine Small	intestine
18	chr2:99432000-99432200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr2:99432000-99432600	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr2:99432000-99432600	Enhancers	Right Ventricle	heart

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