Variant report

Variant	rs6757099
Chromosome Location	chr2:99415235-99415236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99412895..99415398-chr2:99415733..99417676,2	MCF-7	breast:
2	chr2:99385437..99388262-chr2:99414976..99417069,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10188156	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10189330	0.81[ASN][1000 genomes]
rs12712035	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12712036	0.83[EUR][1000 genomes]
rs12999225	0.82[ASN][1000 genomes]
rs13389386	0.93[ASN][1000 genomes]
rs1356424	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568213	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1983352	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2008648	0.80[EUR][1000 genomes]
rs2138082	0.85[EUR][1000 genomes]
rs2276604	0.87[ASN][1000 genomes]
rs2280256	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4263159	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4850888	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4851162	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4851163	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6542838	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6542839	0.83[EUR][1000 genomes]
rs6711022	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6713991	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6719634	0.83[EUR][1000 genomes]
rs6726156	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7579189	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7581128	0.81[ASN][1000 genomes]
rs7582382	0.81[ASN][1000 genomes]
rs9308815	0.81[ASN][1000 genomes]
rs981601	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs981602	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99404400-99417200	Weak transcription	Stomach Mucosa	stomach
2	chr2:99406000-99421800	Weak transcription	Spleen	Spleen
3	chr2:99407600-99415800	Weak transcription	Left Ventricle	heart
4	chr2:99407600-99423800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:99409000-99415600	Weak transcription	Colonic Mucosa	Colon
6	chr2:99409200-99425800	Weak transcription	Small Intestine	intestine
7	chr2:99409600-99426400	Weak transcription	Esophagus	oesophagus
8	chr2:99410600-99421600	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:99411000-99415400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:99411200-99415400	Weak transcription	Brain Angular Gyrus	brain
11	chr2:99411200-99415600	Weak transcription	Brain Substantia Nigra	brain
12	chr2:99411200-99421200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:99411200-99421200	Weak transcription	Right Atrium	heart
14	chr2:99411200-99422200	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:99411400-99415400	Weak transcription	HMEC	breast
16	chr2:99412800-99421800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr2:99413000-99415600	Enhancers	HepG2	liver
18	chr2:99413000-99417400	Weak transcription	Right Ventricle	heart
19	chr2:99413200-99416600	Weak transcription	Liver	Liver
20	chr2:99413800-99415600	Weak transcription	Pancreas	Pancrea
21	chr2:99413800-99416200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:99413800-99417200	Weak transcription	Thymus	Thymus
23	chr2:99413800-99422000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr2:99413800-99423800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr2:99414000-99415400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr2:99414000-99415600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:99414000-99415600	Weak transcription	Gastric	stomach
28	chr2:99414000-99418000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr2:99414000-99418400	Weak transcription	Fetal Intestine Small	intestine
30	chr2:99414000-99426600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr2:99414200-99415600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr2:99414200-99422200	Weak transcription	Fetal Intestine Large	intestine
33	chr2:99414600-99415600	Weak transcription	Brain Anterior Caudate	brain
34	chr2:99414600-99422000	Weak transcription	Fetal Brain Male	brain
35	chr2:99415000-99416600	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr2:99415000-99417600	Enhancers	HUVEC	blood vessel
37	chr2:99415200-99416000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr2:99415200-99418800	Enhancers	Fetal Thymus	thymus
39	chr2:99415200-99418800	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links