Variant report

Variant	rs10189190
Chromosome Location	chr2:190371722-190371723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190371597..190374886-chr2:190378213..190380643,4	K562	blood:
2	chr2:190370323..190372281-chr2:190487630..190489200,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10202029	1.00[JPT][hapmap]
rs11674773	1.00[JPT][hapmap]
rs11677198	0.90[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11677494	0.90[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs11680808	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11682165	0.90[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs11685775	1.00[JPT][hapmap]
rs11691332	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11694976	0.90[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12465339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13007486	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13018571	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13027987	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13029665	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13032311	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1469967	0.89[AMR][1000 genomes]
rs17198934	0.90[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17198955	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17271134	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2119070	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35000023	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35078179	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35209105	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35574177	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4277558	1.00[JPT][hapmap]
rs4667285	0.85[ASN][1000 genomes]
rs62184660	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs726093	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs920266	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv584062	chr2:190272195-190376493	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv3439566	chr2:190364328-190376661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190366000-190377600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:190367000-190378400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:190369000-190372000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:190369400-190371800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:190369400-190371800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:190369800-190371800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:190369800-190371800	Enhancers	Primary hematopoietic stem cells	blood
8	chr2:190369800-190372000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr2:190369800-190372000	Enhancers	Duodenum Mucosa	Duodenum
10	chr2:190369800-190372000	Enhancers	HepG2	liver
11	chr2:190369800-190372000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr2:190369800-190372200	Enhancers	Fetal Intestine Large	intestine
13	chr2:190369800-190372200	Enhancers	Fetal Intestine Small	intestine
14	chr2:190369800-190372400	Enhancers	Stomach Mucosa	stomach
15	chr2:190370400-190372000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr2:190370400-190374400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:190370800-190371800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:190370800-190372000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr2:190371000-190372000	Enhancers	Placenta	Placenta
20	chr2:190371200-190372000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:190371200-190372000	Enhancers	NHEK	skin
22	chr2:190371400-190372400	Enhancers	K562	blood
23	chr2:190371400-190378600	Weak transcription	Psoas Muscle	Psoas
24	chr2:190371600-190372200	Weak transcription	Fetal Lung	lung
25	chr2:190371600-190378000	Weak transcription	Ovary	ovary

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