Variant report

Variant	rs35574177
Chromosome Location	chr2:190397529-190397530
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190393193..190396914-chr2:190397401..190400008,4	MCF-7	breast:
2	chr2:190397457..190400207-chr2:190405459..190407233,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10189190	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11677198	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11677494	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11680808	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11682165	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11691332	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11694976	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13007486	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13018571	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13027987	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13029665	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13032311	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1469967	0.83[AMR][1000 genomes]
rs17198934	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17198955	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17271134	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2119070	0.86[EUR][1000 genomes]
rs35000023	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35078179	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35209105	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62184660	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs726093	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv3356919	chr2:190396757-190398755	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190386600-190398200	Weak transcription	Aorta	Aorta
2	chr2:190392400-190398000	Weak transcription	Stomach Mucosa	stomach
3	chr2:190392400-190398200	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:190392400-190399600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:190392400-190406400	Weak transcription	Small Intestine	intestine
6	chr2:190392600-190397800	Weak transcription	HepG2	liver
7	chr2:190392600-190398000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:190393000-190399400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:190393000-190399800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr2:190393200-190398000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:190393400-190398200	Weak transcription	Adipose Nuclei	Adipose
12	chr2:190393600-190398000	Weak transcription	HSMM	muscle
13	chr2:190393600-190398200	Weak transcription	Fetal Lung	lung
14	chr2:190393800-190397800	Weak transcription	HSMMtube	muscle
15	chr2:190393800-190398000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr2:190393800-190398000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr2:190396200-190398000	Weak transcription	A549	lung
18	chr2:190397000-190400600	Enhancers	Fetal Intestine Small	intestine
19	chr2:190397200-190397600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr2:190397200-190398200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:190397200-190399200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr2:190397200-190400400	Enhancers	Fetal Intestine Large	intestine
23	chr2:190397200-190400400	Weak transcription	Psoas Muscle	Psoas
24	chr2:190397400-190397800	Weak transcription	Ovary	ovary
25	chr2:190397400-190398200	Weak transcription	Placenta	Placenta
26	chr2:190397400-190398600	Weak transcription	Primary monocytes fromperipheralblood	blood

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