Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:190403306..190405315-chr2:190406794..190408650,2	MCF-7	breast:
2	chr2:190401662..190406331-chr2:190407018..190410749,6	K562	blood:
3	chr2:190404115..190405924-chr2:190407998..190410767,2	MCF-7	breast:
4	chr2:190398000..190401261-chr2:190402799..190406846,4	K562	blood:
5	chr2:190401662..190405486-chr2:190407018..190410540,7	K562	blood:
6	chr2:190403642..190408765-chr2:190418705..190422272,7	MCF-7	breast:
7	chr2:190365552..190368406-chr2:190403748..190406239,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10182800	0.87[YRI][hapmap]
rs10189190	0.89[AMR][1000 genomes]
rs10202029	1.00[JPT][hapmap]
rs10206543	1.00[CHB][hapmap]
rs11674773	1.00[JPT][hapmap]
rs11677198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs11677494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11680808	0.87[AMR][1000 genomes]
rs11682165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11685775	1.00[JPT][hapmap]
rs11691332	0.87[AMR][1000 genomes]
rs11694976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs12465339	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs13007486	0.85[AMR][1000 genomes]
rs13018571	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13027987	0.89[AMR][1000 genomes]
rs13029665	0.89[AMR][1000 genomes]
rs13032311	0.83[AMR][1000 genomes]
rs1371468	1.00[CHB][hapmap]
rs1371469	1.00[CHB][hapmap]
rs17198934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs17198941	1.00[CHB][hapmap]
rs17198955	0.91[AMR][1000 genomes]
rs17271134	0.89[AMR][1000 genomes]
rs2119070	0.84[AMR][1000 genomes]
rs35000023	0.87[AMR][1000 genomes]
rs35078179	0.89[AMR][1000 genomes]
rs35209105	0.91[AMR][1000 genomes]
rs35574177	0.83[AMR][1000 genomes]
rs4277558	1.00[JPT][hapmap]
rs62184660	0.87[AMR][1000 genomes]
rs726093	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190392400-190406400	Weak transcription	Small Intestine	intestine
2	chr2:190398400-190405000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:190398400-190405800	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:190399400-190410200	Weak transcription	Aorta	Aorta
5	chr2:190399800-190405600	Weak transcription	HMEC	breast
6	chr2:190400200-190406000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:190400400-190406000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:190400400-190407200	Weak transcription	A549	lung
9	chr2:190400400-190410000	Weak transcription	Fetal Lung	lung
10	chr2:190400600-190406000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr2:190400800-190404800	Weak transcription	Stomach Mucosa	stomach
12	chr2:190400800-190405200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:190400800-190406000	Weak transcription	Psoas Muscle	Psoas
14	chr2:190400800-190408400	Weak transcription	Adipose Nuclei	Adipose
15	chr2:190401000-190406200	Weak transcription	Gastric	stomach
16	chr2:190401000-190406400	Weak transcription	Pancreas	Pancrea
17	chr2:190401000-190409400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:190402000-190406200	Weak transcription	K562	blood
19	chr2:190403400-190405000	Weak transcription	Fetal Intestine Large	intestine
20	chr2:190403600-190405200	Weak transcription	Fetal Intestine Small	intestine
21	chr2:190403600-190405800	Weak transcription	HepG2	liver

Quick Search: