Variant report

Variant	rs10189888
Chromosome Location	chr2:212249174-212249175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10169508	0.82[AMR][1000 genomes]
rs11887436	0.82[AMR][1000 genomes]
rs11895530	0.82[AMR][1000 genomes]
rs13392814	0.82[AMR][1000 genomes]
rs16846111	1.00[EUR][1000 genomes]
rs16846114	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
4	nsv460065	chr2:212244520-212276710	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv584315	chr2:212244520-212276710	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212244000-212254800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:212244200-212253800	Weak transcription	Fetal Heart	heart
3	chr2:212245800-212256800	Weak transcription	Psoas Muscle	Psoas
4	chr2:212246800-212255400	Weak transcription	Brain Anterior Caudate	brain
5	chr2:212247200-212249600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:212248000-212255200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:212248800-212249600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:212248800-212250600	Weak transcription	Aorta	Aorta
9	chr2:212248800-212252200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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