Variant report

Variant	rs10169508
Chromosome Location	chr2:212233784-212233785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10189888	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs10208487	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11887436	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11888548	0.82[AFR][1000 genomes]
rs11895530	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13392814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58853206	1.00[EUR][1000 genomes]
rs59197841	1.00[EUR][1000 genomes]
rs73083827	1.00[EUR][1000 genomes]
rs7569828	1.00[EUR][1000 genomes]
rs7595889	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212232000-212234400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212233200-212234400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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