Variant report

Variant	rs7595889
Chromosome Location	chr2:212239856-212239857
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10169508	1.00[EUR][1000 genomes]
rs10189888	1.00[CEU][hapmap]
rs55633073	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56172792	0.81[AFR][1000 genomes]
rs58853206	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59197841	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66600814	0.88[AFR][1000 genomes]
rs73081796	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73081798	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083806	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083814	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083815	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083827	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73985404	1.00[AMR][1000 genomes]
rs73985405	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73988843	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7569828	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7586570	0.93[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv584314	chr2:212238982-212292521	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212237600-212248200	Weak transcription	Aorta	Aorta
2	chr2:212238800-212244400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links