Variant report

Variant	rs73081798
Chromosome Location	chr2:212219973-212219974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10205509	1.00[EUR][1000 genomes]
rs10221912	1.00[EUR][1000 genomes]
rs11885425	1.00[EUR][1000 genomes]
rs11887436	1.00[EUR][1000 genomes]
rs11895530	1.00[EUR][1000 genomes]
rs13386225	1.00[EUR][1000 genomes]
rs13390068	1.00[EUR][1000 genomes]
rs13392814	1.00[EUR][1000 genomes]
rs13423759	1.00[EUR][1000 genomes]
rs16846146	1.00[EUR][1000 genomes]
rs55633073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56172792	0.85[AFR][1000 genomes]
rs58121273	1.00[EUR][1000 genomes]
rs58853206	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59197841	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61241208	1.00[EUR][1000 genomes]
rs66600814	0.92[AFR][1000 genomes]
rs6712900	1.00[EUR][1000 genomes]
rs73081796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73083806	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083812	0.83[AFR][1000 genomes]
rs73083814	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083815	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083827	0.87[AFR][1000 genomes]
rs73985404	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73985405	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73988843	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7567117	1.00[EUR][1000 genomes]
rs7569828	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7586570	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7595889	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834522	chr2:212066442-212225328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv584313	chr2:212176967-212224689	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212214200-212223000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr2:212214200-212232000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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