Variant report

Variant	rs16846146
Chromosome Location	chr2:212295231-212295232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10205509	1.00[EUR][1000 genomes]
rs10221912	1.00[EUR][1000 genomes]
rs11885425	1.00[EUR][1000 genomes]
rs11887436	1.00[EUR][1000 genomes]
rs11895530	1.00[EUR][1000 genomes]
rs13386225	1.00[EUR][1000 genomes]
rs13390068	1.00[EUR][1000 genomes]
rs13392814	1.00[EUR][1000 genomes]
rs13423759	1.00[EUR][1000 genomes]
rs55633073	1.00[EUR][1000 genomes]
rs58121273	1.00[EUR][1000 genomes]
rs61241208	1.00[EUR][1000 genomes]
rs6712900	1.00[EUR][1000 genomes]
rs73081798	1.00[EUR][1000 genomes]
rs73083806	1.00[EUR][1000 genomes]
rs73083814	1.00[EUR][1000 genomes]
rs73083815	1.00[EUR][1000 genomes]
rs73985404	1.00[EUR][1000 genomes]
rs73985405	1.00[EUR][1000 genomes]
rs7567117	1.00[EUR][1000 genomes]
rs7586570	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875777	chr2:212274937-212295875	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv520702	chr2:212292521-212299979	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212281600-212301200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212287000-212295400	Weak transcription	HUVEC	blood vessel
3	chr2:212288200-212302400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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