Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10169508	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10189888	0.82[AMR][1000 genomes]
rs10205509	1.00[EUR][1000 genomes]
rs10208487	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10221912	1.00[EUR][1000 genomes]
rs11885425	1.00[EUR][1000 genomes]
rs11887436	0.87[ASW][hapmap];0.84[LWK][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11888548	0.88[AFR][1000 genomes]
rs11895530	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11901831	0.85[AFR][1000 genomes]
rs13386225	1.00[EUR][1000 genomes]
rs13390068	1.00[EUR][1000 genomes]
rs13423759	1.00[EUR][1000 genomes]
rs16846146	1.00[EUR][1000 genomes]
rs55633073	1.00[EUR][1000 genomes]
rs58121273	1.00[EUR][1000 genomes]
rs61241208	1.00[EUR][1000 genomes]
rs6712900	1.00[EUR][1000 genomes]
rs73081798	1.00[EUR][1000 genomes]
rs73083806	1.00[EUR][1000 genomes]
rs73083814	1.00[EUR][1000 genomes]
rs73083815	1.00[EUR][1000 genomes]
rs73985404	1.00[EUR][1000 genomes]
rs73985405	1.00[EUR][1000 genomes]
rs7567117	1.00[EUR][1000 genomes]
rs7586570	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212227200-212232400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:212230200-212232400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:212230400-212232400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:212231000-212232400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:212231000-212232600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:212231000-212232600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:212231800-212233000	Enhancers	NHEK	skin
8	chr2:212231800-212233200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:212232000-212232600	Enhancers	HMEC	breast
10	chr2:212232000-212232800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:212232000-212233200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:212232000-212233200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr2:212232000-212234400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:212232200-212232600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:212232200-212233000	Enhancers	Fetal Kidney	kidney
16	chr2:212232200-212233000	Enhancers	GM12878-XiMat	blood
17	chr2:212232200-212233200	Enhancers	HUES6 Cell Line	embryonic stem cell

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