Variant report
| Variant | rs7567117 |
|---|---|
| Chromosome Location | chr2:212314837-212314838 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10205509 | 1.00[EUR][1000 genomes] |
| rs10221912 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11885425 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11887436 | 1.00[EUR][1000 genomes] |
| rs11895530 | 1.00[EUR][1000 genomes] |
| rs13386225 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13390068 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13392814 | 1.00[EUR][1000 genomes] |
| rs13423759 | 1.00[EUR][1000 genomes] |
| rs16846146 | 1.00[EUR][1000 genomes] |
| rs55633073 | 1.00[EUR][1000 genomes] |
| rs58121273 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61241208 | 1.00[EUR][1000 genomes] |
| rs6712900 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73081798 | 1.00[EUR][1000 genomes] |
| rs73083806 | 1.00[EUR][1000 genomes] |
| rs73083814 | 1.00[EUR][1000 genomes] |
| rs73083815 | 1.00[EUR][1000 genomes] |
| rs73985404 | 1.00[EUR][1000 genomes] |
| rs73985405 | 1.00[EUR][1000 genomes] |
| rs7586570 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834523 | chr2:212163236-212331393 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1000722 | chr2:212272622-212465143 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv875778 | chr2:212297838-212360994 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv460066 | chr2:212307077-212329416 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | nsv584316 | chr2:212307077-212329416 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv460067 | chr2:212313400-212378242 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 7 | nsv584317 | chr2:212313400-212378242 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212304600-212317800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
