Variant report

Variant	rs10205509
Chromosome Location	chr2:212317020-212317021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10221912	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11885425	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11887436	1.00[EUR][1000 genomes]
rs11895530	1.00[EUR][1000 genomes]
rs13386225	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13390068	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13392814	1.00[EUR][1000 genomes]
rs13423759	1.00[EUR][1000 genomes]
rs16846146	1.00[EUR][1000 genomes]
rs55633073	1.00[EUR][1000 genomes]
rs58121273	1.00[EUR][1000 genomes]
rs61241208	1.00[EUR][1000 genomes]
rs6712900	1.00[EUR][1000 genomes]
rs73081798	1.00[EUR][1000 genomes]
rs73083806	1.00[EUR][1000 genomes]
rs73083814	1.00[EUR][1000 genomes]
rs73083815	1.00[EUR][1000 genomes]
rs73985404	1.00[EUR][1000 genomes]
rs73985405	1.00[EUR][1000 genomes]
rs7567117	1.00[EUR][1000 genomes]
rs7586570	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460066	chr2:212307077-212329416	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv584316	chr2:212307077-212329416	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv460067	chr2:212313400-212378242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv584317	chr2:212313400-212378242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212304600-212317800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212316400-212319600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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