Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10165154	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10183142	0.93[ASN][1000 genomes]
rs10194554	0.99[ASN][1000 genomes]
rs11884984	0.96[ASN][1000 genomes]
rs11895935	0.94[ASN][1000 genomes]
rs12611498	0.99[ASN][1000 genomes]
rs12611558	0.99[ASN][1000 genomes]
rs12618005	0.99[ASN][1000 genomes]
rs12618032	0.99[ASN][1000 genomes]
rs12621414	0.97[ASN][1000 genomes]
rs12995397	0.96[ASN][1000 genomes]
rs13024435	0.93[ASN][1000 genomes]
rs13408365	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13429414	0.99[ASN][1000 genomes]
rs1369528	0.95[ASN][1000 genomes]
rs1991997	0.99[ASN][1000 genomes]
rs1991998	0.99[ASN][1000 genomes]
rs2381169	0.97[ASN][1000 genomes]
rs4662555	0.99[ASN][1000 genomes]
rs6429927	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7593594	0.96[ASN][1000 genomes]
rs9287326	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142640400-142647000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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