Variant report

Variant	rs10183142
Chromosome Location	chr2:142660888-142660889
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10165154	0.85[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10181838	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs10182288	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10190657	0.93[ASN][1000 genomes]
rs10194554	0.92[ASN][1000 genomes]
rs10198650	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10496906	0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap]
rs11693445	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs11884984	0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs11895935	0.89[ASN][1000 genomes]
rs12467014	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs12471235	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12611498	0.93[ASN][1000 genomes]
rs12611558	0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs12618005	0.93[ASN][1000 genomes]
rs12618032	0.93[ASN][1000 genomes]
rs12621414	0.90[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs12623563	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs12995397	0.94[ASN][1000 genomes]
rs13012265	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs13013316	0.91[CHD][hapmap];0.82[JPT][hapmap]
rs13024435	1.00[ASN][1000 genomes]
rs13031056	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13408365	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs13418027	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap]
rs13429414	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1369528	0.91[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1369530	0.95[JPT][hapmap]
rs1369542	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];0.80[TSI][hapmap]
rs1435598	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1435612	0.83[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs1435616	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1529869	0.88[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.81[MKK][hapmap]
rs1561019	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs16847640	0.83[CHB][hapmap]
rs1898018	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs1991997	0.91[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1991998	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2196353	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs2381169	0.96[ASN][1000 genomes]
rs34879655	0.83[ASN][1000 genomes]
rs4662555	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4662557	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs6429927	0.89[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7421755	0.80[JPT][hapmap]
rs7579772	0.95[JPT][hapmap]
rs7593594	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7602677	0.82[CHB][hapmap]
rs9287326	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9789430	1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv875251	chr2:142656200-142701852	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142659000-142664000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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