Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10165154	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs10182288	0.86[JPT][hapmap]
rs10183142	0.91[CHD][hapmap];0.82[JPT][hapmap]
rs10198650	0.86[JPT][hapmap]
rs10205836	1.00[YRI][hapmap]
rs10496906	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs11693445	0.86[JPT][hapmap]
rs11884984	0.81[JPT][hapmap]
rs12467014	0.91[CHD][hapmap]
rs12611558	0.84[JPT][hapmap]
rs12613802	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs12613827	0.91[CEU][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap]
rs12623563	0.82[CHD][hapmap]
rs13012265	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs13408365	0.86[JPT][hapmap]
rs13418027	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs13429414	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs13430581	0.85[YRI][hapmap]
rs1369528	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs1369530	0.86[JPT][hapmap]
rs1435598	0.84[JPT][hapmap]
rs1435612	0.88[CHD][hapmap]
rs1561019	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs1898018	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs1991997	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs1991998	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs4662555	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs4662557	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs6429927	0.80[CHD][hapmap];0.86[JPT][hapmap]
rs6742089	1.00[YRI][hapmap]
rs7579772	0.86[JPT][hapmap]
rs7593594	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs7599985	0.92[YRI][hapmap]
rs9287326	0.86[JPT][hapmap]
rs9789430	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875251	chr2:142656200-142701852	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1004207	chr2:142684812-142741653	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2762863	chr2:142684812-142771707	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142683000-142688400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:142683400-142688000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:142684200-142687600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:142685200-142685800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:142685200-142685800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:142685200-142685800	Enhancers	HMEC	breast
7	chr2:142685200-142686800	Enhancers	NHDF-Ad	bronchial

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