Variant report

Variant	rs11884984
Chromosome Location	chr2:142647210-142647211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10165154	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs10181838	0.87[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs10182288	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs10183142	0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs10190657	0.96[ASN][1000 genomes]
rs10194554	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10198650	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10496906	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs11693445	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs11895935	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12467014	0.88[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap]
rs12471235	0.88[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs12611498	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12611558	0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12618005	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12618032	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12621414	0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12623563	0.87[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12691627	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12995397	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13012265	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs13013316	0.81[JPT][hapmap]
rs13024435	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13031056	0.88[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13408365	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs13418027	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13429414	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1369528	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1369530	0.88[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1369542	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs1435598	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs1435612	0.87[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1435616	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs1529869	0.95[CHB][hapmap]
rs1561019	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs1898018	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1991997	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1991998	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2196353	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs2381169	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34879655	0.80[AMR][1000 genomes]
rs4662555	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4662557	0.87[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs6429927	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs7579772	0.88[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7590166	0.82[ASN][1000 genomes]
rs7593594	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7602677	0.85[CHB][hapmap]
rs9287326	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9789430	0.85[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142646600-142647400	Enhancers	Brain Angular Gyrus	brain
2	chr2:142646600-142647600	Enhancers	Brain Hippocampus Middle	brain
3	chr2:142647000-142647400	Enhancers	Brain Anterior Caudate	brain
4	chr2:142647000-142647400	Enhancers	Brain Cingulate Gyrus	brain
5	chr2:142647000-142647800	Enhancers	Brain Germinal Matrix	brain
6	chr2:142647200-142647400	Flanking Active TSS	Brain Substantia Nigra	brain

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