Variant report

Variant	rs13031056
Chromosome Location	chr2:142703658-142703659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142703652..142704157-chr2:142795131..142795850,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10165154	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10181838	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10182288	0.93[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10183142	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10194554	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10198650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs10496906	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11693445	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs11884984	0.88[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11895935	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12467014	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs12471235	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap]
rs12611498	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12611558	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12618005	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12618032	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12621414	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12623563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12691627	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12995397	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13011272	1.00[YRI][hapmap]
rs13012265	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13024435	0.83[AMR][1000 genomes]
rs13408365	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13418027	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13429414	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1369528	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs1369530	0.93[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs1369542	1.00[CHB][hapmap]
rs1435598	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1435612	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1435616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1529869	1.00[CHB][hapmap]
rs1561019	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs16847640	0.83[CHB][hapmap]
rs1898018	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1991997	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1991998	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2196353	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs2381169	1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4662555	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4662557	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs6429927	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7421755	0.85[JPT][hapmap];0.83[YRI][hapmap]
rs7569225	0.80[JPT][hapmap]
rs7579772	0.93[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs7593594	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7602677	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs9287326	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs960219	1.00[YRI][hapmap]
rs9789430	0.96[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1004207	chr2:142684812-142741653	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2762863	chr2:142684812-142771707	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142700400-142703800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:142703600-142704200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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