Variant report

Variant	rs7421755
Chromosome Location	chr2:142717631-142717632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10181838	0.89[JPT][hapmap]
rs10183142	0.80[JPT][hapmap]
rs10198650	0.83[YRI][hapmap]
rs12467014	0.90[JPT][hapmap];0.83[YRI][hapmap]
rs12471235	0.90[JPT][hapmap]
rs12623563	0.85[JPT][hapmap];0.82[YRI][hapmap]
rs13011272	0.88[YRI][hapmap]
rs13031056	0.85[JPT][hapmap];0.83[YRI][hapmap]
rs1435598	0.83[JPT][hapmap]
rs1435612	0.85[JPT][hapmap]
rs1435616	0.90[JPT][hapmap]
rs1898018	0.82[YRI][hapmap]
rs2196353	0.90[JPT][hapmap];0.83[YRI][hapmap]
rs2381169	0.82[YRI][hapmap]
rs4662557	0.82[YRI][hapmap]
rs7593594	0.82[YRI][hapmap]
rs960219	0.87[YRI][hapmap]
rs9789430	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1004207	chr2:142684812-142741653	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2762863	chr2:142684812-142771707	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142715000-142718000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:142715200-142718400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:142716800-142717800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:142716800-142717800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:142717400-142717800	Flanking Active TSS	Brain Hippocampus Middle	brain
6	chr2:142717400-142718200	Active TSS	Brain Substantia Nigra	brain
7	chr2:142717600-142718000	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr2:142717600-142718000	Active TSS	Brain Cingulate Gyrus	brain
9	chr2:142717600-142718000	Active TSS	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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